Reaction rates for all reactions
glycol
Vmax_glucN*_gluc*pow(_NAD, 2.0)*pow(_ADP, 2.0)*pow(_Phos, 2.0)/((Km_glucNgl + _gluc)*(pow(Km_glucNN, 2.0) + pow(_NAD, 2.0))*(pow(Km_glucNA, 2.0) + pow(_ADP, 2.0))*(pow(Km_glucNP, 2.0) + pow(_Phos, 2.0)))
******
Krebs1
Vmax_PyN*(_mPy0/(_mPy0 + Km_PyNP)*_Ox/(_Ox + Km_PyNO)/(1.0 + Ka_PyNA/_mADP)*pow(_mNAD, 2.0)/(pow(_mNAD, 2.0) + pow(Km_PyNN, 2.0)))
******
Krebs2
Vmax_AKGN*_AKG*_mNAD*_mADP*_mPhos/((Km_AKGNA + _AKG)*(Km_AKGNN + _mNAD)*(Km_AKGNAD + _mADP)*(Km_AKGNP + _mPhos))
******
Krebs3
Vmax_sucN*_suc*_mNAD*_mFAD/((Km_sucNs + _suc)*(Km_sucNN + _mNAD)*(Km_sucNF + _mFAD))
******
Noxy
Vmax_NQ*((_mNADH/_mNAD)/((_mNADH/_mNAD) + (Km_NQN))*_mO2/(_mO2 + Km_NQO)*(_mHy/_Hy)/((_mHy/_Hy) + Km_NQH))
******
Foxy
Vmax_FQ*((_mFADH/_mFAD)/((_mFADH/_mFAD) + (Km_FQF))*_mO2/(_mO2 + Km_FQO)*(_mHy/_Hy)/((_mHy/_Hy) + Km_FQH))
******
Hyleak
(k1_lk*(exp(k2_lk*PMF) - 1.0))
******
Cortoxphos
VmaxC_oxp*(((100.0*p_a_C + p_c1_C*exp(3.0*0.0374*50.0))*(K_F1*_mATP/_mADP/_mPhos) - exp(3.0*0.0374*PMF)*(p_a_C + p_c2_C*(K_F1*_mATP/_mADP/_mPhos)))/((1.0 + p_1_C*(K_F1*_mATP/_mADP/_mPhos))*exp(3.0*0.0374*50.0) + (p_2_C + p_3_C*(K_F1*_mATP/_mADP/_mPhos))*exp(3.0*0.0374*PMF)))
******
CO2toHm
(k_CHm*_mCO2 - k_nCHm*_mHy*_mBiC)
******
PytoL
Vmax_PyL*(1.0/(1.0 + Km_PyLPy/_Py0 + Km_PyLNH/_NADH + Km_PyLPN/_Py0/_NADH + Km_PyLH/_Hy) - VR_PyL/(1.0 + Km_PyLL/_L0 + Km_PyLN/_NAD + Km_PyLLN/_L0/_NAD))
******
PCrtoATP
(k_PCrATP*_PCr*_ADP*_Hy - k_nPCrATP*_Cr*_ATP)
******
ATPuse
Vmax_ATPuse*_ATP/(Km_ATPuse + _ATP)
******
aden1
(k_ADPATP*pow(_ADP, 2.0) - k_nADPATP*_ATP*_AMP)
******
aden2
(k_AMPAd*_AMP - k_nAMPAd*_Ad)
******
lactic
(k_LH*_lac - k_nLH*_L0*_Hy)
******
CO2toH1
(k_CHi*_CO2 - k_nCHi*_Hy*_BiC)
******
genbuf
(k_Pbuf*PbufH - k_nPbuf*Pbuf*_Hy)
******
elactic
(k_LH*_eL - k_nLH*_eL0*_eHy)
******
CO2toHe
(k_CHe*_eCO2 - k_nCHe*_eHy*_eBiC)
******
potinject
k_Kinj
******
hemacid1
(k_XH*X*Hy - k_nXH*X_H)
******
hemacid2
(k_XO4H*X_O4*Hy - k_nXO4H*X_O4_H)
******
hemoxy1
(k_XO4*X*pow(O2, 2.5) - k_nXO4*X_O4)
******
hemoxy2
(k_XHO*X_H*pow(O2, 2.5) - k_nXHO*X_O4_H)
******
CO2toH
(k_CH*CO2 - k_nCH*Hy*BiC)
******
lacticb
(k_LH*L - k_nLH*L0*Hy)
******
carbam
(k_CY*CO2*Y - k_nCY*CY)
******
venhemacid1
(k_XH*X_v*Hy_v - k_nXH*X_H_v)
******
venhemacid2
(k_XO4H*X_O4_v*Hy_v - k_nXO4H*X_O4_H_v)
******
venhemoxy1
(k_XO4*X_v*pow(O2_v, 2.5) - k_nXO4*X_O4_v)
******
venhemoxy2
(k_XHO*X_H_v*pow(O2_v, 2.5) - k_nXHO*X_O4_H_v)
******
venCO2toH
(k_CH*CO2_v - k_nCH*Hy_v*BiC_v)
******
venlacticb
(k_LH*L_v - k_nLH*L0_v*Hy_v)
******
vencarbam
(k_CY*CO2_v*Y_v - k_nCY*CY_v)
******
MAshuttle
(k_MAshut*_NADH*_Hy*_mNAD - k_nMAshut*_mNADH*_mHy*_NAD)
******
pyrshuttle
Vmax_Pyshut*((_Py0*_Hy - _mPy0*_mHy)/((_Py0*_Hy + K_Pyshut*(1.0 + p_Pyshut))*(_mPy0*_mHy + K_Pyshut*(1.0 + p_Pyshut)) - pow(K_Pyshut, 2)*pow(p_Pyshut, 2)))
******
Phosshuttle
Vmax_Phosshut*((_Phos*_Hy - _mPhos*_mHy)/((_Phos*_Hy + K_Phosshut*(1.0 + p_Phosshut))*(_mPhos*_mHy + K_Phosshut*(1.0 + p_Phosshut)) - pow(K_Phosshut, 2)*pow(p_Phosshut, 2)))
******
ATPshuttle1
Vmax_ANT*((1.0-k1_ANT*_ATP*_mADP/(_ADP*_mATP))/(1.0 + k2_ANT*exp(-0.5*PD_mit/26.73)*_ATP/_ADP)/(1.0 + k3_ANT*_mADP/_mATP))
******
O2shuttle
+ k_O2shut*(_O2 - _mO2)
******
CO2shuttle
+ k_CO2shut*(_CO2 - _mCO2)
******
BiCshuttle
(k_BiCshut*_BiC - k_nBiCshut*_mBiC)
******
potpump
Vmax_KATP*(_ATP/(Km_KATPA + _ATP)*(_eK/_K)/(Km_KATPK + (_eK/_K))*(_Na/_eNa)/(Km_KATPNa + (_Na/_eNa)))
******
ECdiffgluc
+ k_ecgluc*(_egluc - _gluc)
******
ECdiffO
+ k_ecOO*(_eO2 - _O2)
******
ECdiffCO2
+ k_ecCC*(_eCO2 - _CO2)
******
ECdiffPy0
+ k_ecPy0*(_ePy0 - _Py0)
******
ECdiffAd
+ k_ecAd*(_eAd - _Ad)
******
ECdiffK
+ k_ecKK*(_eK - _K)
******
ECdiffNa
+ k_ecNa*(_eNa - _Na)
******
ECdiffL0H
Vmax_ecL0H*(_eL0*_eHy - _L0*_Hy)/((_eL0*_eHy + K_ecL0H*(1.0 + p_ecL0H))*(_L0*_Hy + K_ecL0H*(1.0 + p_ecL0H)) - pow(K_ecL0H, 2)*pow(p_ecL0H, 2))
******
ECdiffL
+ k_ecL*(_eL - _lac)
******
BEdiffgluc
Vmax_gluc*(gluc - _egluc)/((gluc + K_gluc*(1.0 + p_gluc))*(_egluc + K_gluc*(1.0 + p_gluc)) - pow(K_gluc, 2)*pow(p_gluc, 2))
******
BEdiffL0H
Vmax_L0H*(_eL0*_eHy - L0*Hy)/((_eL0*_eHy + K_L0H*(1.0 + p_L0H))*(L0*Hy + K_L0H*(1.0 + p_L0H)) - pow(K_L0H, 2)*pow(p_L0H, 2))
******
BEdiffO
+ k_OO*(O2 - _eO2)
******
BEdiffCO2
+ k_CC*(CO2 - _eCO2)
******
BEdiffK1
Vmax1_KK*K/(Km_KK + K)
******
BEdiffK2
Vmax2_KK*_eK/(Km_KK + _eK)
******
BEdiffNa
+ k_Na*(Na - _eNa)
******
BEdiffBiC1
Vmax1_BiC*BiC/(Km_BiC + BiC)
******
BEdiffBiC2
Vmax2_BiC*_eBiC/(Km_BiC + _eBiC)
******
BEdiffL
+ k_LL*(L - _eL)
******
Caentry1
k_Cain1
******
Caentry2
k_Cain2
******
Caexit1
Vmax_Caout1*Ca_i1/(Km_Caout + Ca_i1)
******
Caexit2
Vmax_Caout2*Ca_i2/(Km_Caout + Ca_i2)
******
NObuf1
(k_NOprod1 - k_NOout1*NO1)
******
NObuf2
(k_NOprod2 - k_NOout2*NO2)
******
MLC1inac
(k_MLC1ac*MLC1 - k_MLC1inac*MLCp1)
******
MLC2inac
(k_MLC2ac*MLC2 - k_MLC2inac*MLCp2)
******